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Recent publications

Tanja Buchacher et al. Persistent coxsackievirus B1 infection triggers extensive changes in the transcriptome of human pancreatic ductal cells. iScience. 25(1): 103653, 2022. Link to page→

Mohd Moin Khan et al. PP2A and Its Inhibitors in Helper T-Cell Differentiation and Autoimmunity. Front. Immunol., 05 January, 2022. Link to page→

Ye Hong et al. PhosPiR: an automated phosphoproteomic pipeline in R. Briefings in Bioinformatics. 2021 Dec 8. Pubmed→

Partho S. et al. Quantitative genome-scale metabolic modeling of human CD4+ T cell differentiation reveals subset-specific regulation of glycosphingolipid pathways. Cell Reports. 2021 Nov. 9:37;6. Link to page→

Lamichhane S. et al. Exposure to per- and polyfluoroalkyl substances associates with an altered lipid composition of breast milk. Environ Int . 2021 Dec;157:106855. Pubmed→

Masoodi M et al. Metabolomics and lipidomics in NAFLD: biomarkers and non-invasive diagnostic tests. Nat Rev Gastroenterol Hepatol. 2021 Sep 10. Pubmed→

Sen P. et al. Exposure to environmental contaminants is associated with altered hepatic lipid metabolism in non-alcoholic fatty liver disease. J Hepatol . 2021 Oct 7;S0168-8278(21)02104-8.Pubmed→

Salomaa S et al. Conformational dynamics regulate SHANK3 actin and Rap1 binding. Current Biology. October 04, 2021. Link to Page→

Moreno-Layseca P et al. Cargo-specific recruitment in clathrin- and dynamin-independent endocytosis. Nat Cell Biol. 2021 Oct 6. Pubmed→

Miihkinen M et al. Myosin-X and talin modulate integrin activity at filopodia tips. Cell Rep. 2021 Sep 14;36(11):109716. Pubmed→

Al-Akhrass H et al. Sortilin-related receptor is a druggable therapeutic target in breast cancer. Mol Oncol. 2021 Sep 26. Pubmed→

Smolander J. et al. Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data. BMC Genomics. 2021 May 17;22(1):357.Pubmed→

Lund RJ. et al. Placental DNA methylation marks are associated with maternal depressive symptoms during early pregnancy. Neurobiol Stress. 2021 Jul 31;15:100374.Pubmed→

Lamicchane S. et al. Exposure to per- and polyfluoroalkyl substances associates with an altered lipid composition of breast milk. Environ Int. 2021 Sep 6;157:106855. Pubmed→

Lund R et al. Placental DNA methylation marks are associated with maternal depressive symptoms during early pregnancy. Neurobiol Stress. 2021 Nov; 15: 100374. Pubmed→

Florian F et al. Hippocampal overexpression of NOS1AP promotes endophenotypes related to mental disorders. EBioMedicine. 2021 Sep; 71: 103565. Pubmed→

Faux T et al. Differential ATAC-seq and ChIP-seq peak detection using ROTS. NAR Genomics and Bioinformatics, Volume 3, Issue 3, September 2021. Link to page→

Felix I et al. Single-Cell Proteomics Reveals the Defined Heterogeneity of Resident Macrophages in White Adipose Tissue. Front. Immunol., 26 July 2021 Link to page→

Laine A. et al. CIP2A interacts with TopBP1 and drives basal-like breast cancer tumorigenesis. Cancer Res. 2021 Jun 18. Pubmed→

Neeraj P. et al. Circumventing Drug Treatment? Intrinsic Lethal Effects of Polyethyleneimine (PEI)-Functionalized Nanoparticles on Glioblastoma Cells Cultured in Stem Cell Conditions. Cancers (Basel). 2021 May 27;13(11):2631. Pubmed→

Gensollen T et al. Embryonic macrophages function during early life to determine invariant natural killer T cell levels at barrier surfaces. Nat Immunol. 2021; 22, 699–710. Pubmed→

Stephin J Vervoort et al. The PP2A-Integrator-CDK9 axis fine-tunes transcription and can be targeted therapeutically in cancer. Cell. 2021 May 12. Online ahead of print. Pubmed→

Vihervaara A et al. Stress-induced transcriptional memory accelerates promoter-proximal pause release and decelerates termination over mitotic divisions. Mol Cell . 2021 Apr 15;81(8):1715-1731.e6. Pubmed→

Vainonen J et al. Druggable cancer phosphatases. Sci Transl Med. 2021 Apr 7. Pubmed→

Matila KE at al. A Three-feature Prediction Model for Metastasis-free Survival after Surgery of Localized Clear Cell Renal Cell Carcinoma. Scientific reports. 2021 Apr 21;11(1):8650. Pubmed→

Gulich AF et al. Complex Interplay Between MAZR and Runx3 Regulates the Generation of Cytotoxic T Lymphocyte and Memory T Cells. Front Immunol. 2021 Mar 17;12:535039. Pubmed→

Solveig KS et al. Crowdsourcing digital health measures to predict Parkinson’s disease severity: the Parkinson’s Disease Digital Biomarker DREAM Challenge. NPJ Digit Med. 2021 Mar 19;4(1):53. Pubmed→

Mäkelä E et al. Discovery of a Novel CIP2A Variant (NOCIVA) with clinical relevance in predicting TKI resistance in myeloid leukemias. Clin Cancer Res. 2021 Mar 5. Pubmed→

Venäläinen MS. Preoperative Risk Prediction Models for Short-Term Revision and Death After Total Hip Arthroplasty: Data from the Finnish Arthroplasty Register. JB JS Open Access. 2021 Jan 25;6(1):e20.00091. Pubmed→