Instruments

    Mass Spectrometers

    ZenoTOF 7600

    With electron activated dissociation (EAD) fragmentation for top-down and post-translational modification proteomics.

    With ZenoTrap for improved MS/MS sensitivity.

    Orbitrap Exploris 480

    With the FAIMS Pro Duo interface for Enhanced LC/MS instrument selectivity and detection limits.

    Orbitrap Fusion Lumos Mass Spectrometer

    With ETD and UVPD fragmentation techniques for top-down proteomics.

    With the FAIMS Pro interface for Enhanced LC/MS instrument selectivity and detection limits.

    Q Exactive HF Mass Spectrometer

    ESI-hybrid quadrupole-orbitrap (Thermo Scientific)

    TSQ Vantage

    ESI-triple stage quadrupole (Thermo Scientific)
    for targeted protein quantitation (SRM).

    Chromatography

    EASY-nLC 1200/1000

    A dedicated nano LC system for proteomic analyses.

    Evosep One

    UHPLC instrument for robust and high throughput proteomics.

    Agilent 1260 Infinity

    Liquid chromatography system for offline peptide separations.

    Data Processing and Analysis Computers

    Turku Proteomics Facility has three open access workstations.

    Available software licences:

    • Proteome Discoverer 3.1
      • Chimerys Intelligent Search Algorithm
      • Mascot 2.8 Server
    • Spectronaut 19
    • Spectrodive 11