Selected Publications with Contribution of Turku Proteomics Facility Members

2020

Grabsztunowicz M, Rokka A, Farooq I, Aro EM and Mulo P. Gel-based proteomic map of Arabidopsis thaliana root plastids and mitochondria. BMC Plant Biol. 2020 Sep 4;20(1):413. doi: 10.1186/s12870-020-02635-6. PMID: 32887556.

Katali O, Shipingana L, Nyarangó P, Pääkkönen M, Haindongo E, Rennie T, James P, Eriksson J, Hunter CJ. Protein Identification of Venoms of the African Spitting Cobras, Naja mossambica and Naja nigricincta nigricincta. Toxins (Basel). 2020 Aug 14;12(8):E520. doi: 10.3390/toxins12080520. PMID: 32823821.

Aakko J, Pietilä S, Toivonen R, Rokka A, Mokkala K, Laitinen K, Elo L, and Hänninen A. A carbohydrate-active enzyme (CAZy) profile links successful metabolic specialization of Prevotella to its abundance in gut microbiota. Sci Rep. 2020 Jul 24;10(1):12411. doi: 10.1038/s41598-020-69241-2. PMID: 32709972.

Rigaud C, Eriksson A, Rokka A, Skaugen M, Lihavainen J, Keinänen M, Lehtivuori H, Ihalainen J and Vehniäinen ER. Retene, pyrene and phenanthrene cause distinct molecular-level changes in the cardiac tissue of rainbow trout (Oncorhynchus mykiss) larvae, Part 2 – Proteomics and metabolomics. Sci Total Environ. 2020 Jul 25;746:141161. doi: 10.1016/j.scitotenv.2020.141161.PMID: 32750582.

Calvaruso C, Rokka A, Aro EM, and Büchel C. Antenna composition of PSI and PSII supercomplexes reveals photosystem-specific Lhc proteins in the diatom Thalassiosira pseudonana. Plant Physiol. 2020 May;183(1):67-79. doi: 10.1104/pp.20.00042. PMID: 32198308.

Kimura S, Hunter K, Vaahtera L, Tran HC, Citterico M, Vaattovaara A, Rokka A, Stolze SC, Harzen A, Meißner L, Wilkens MMT, Hamann T, Toyota M, Nakagami H, Wrzaczek M. CRK2 and C-terminal Phosphorylation of NADPH Oxidase RBOHD Regulate Reactive Oxygen Species Production in Arabidopsis
Plant Cell. 2020 Apr;32(4):1063-1080. doi: 10.1105/tpc.19.00525
PMID: 32034035.

Kauko O, Imanishi SY, Kulesskiy E, Yetukuri L, Laajala TD, Sharma M, Pavic K, Aakula A, Rupp C, Jumppanen M, Haapaniemi P, Ruan L, Yadav B, Suni V, Varila T, Corthals GL, Reimand J, Wennerberg K, Aittokallio T, Westermarck J. Phosphoproteome and drug-response effects mediated by the three protein phosphatase 2A inhibitor proteins CIP2A, SET, and PME-1. J Biol Chem. 2020 Mar 27;295(13):4194-4211. doi: 10.1074/jbc.RA119.011265. PMID: 32071079

2019

Aakko J., Pietilä S., Suomi T., Mahmoudian M., Toivonen R., Kouvonen P., Rokka A., Hänninen A., Elo LL. Data-independent acquisition mass spectrometry in metaproteomics of gut microbiota – implementation and computational analysis J. Proteome Res. 2019 DOI: 10.1021/acs.jproteome.9b00606

Hunter K., Kimura S., Rokka A., Tran HC., Toyota M., Kukkonen JP., Wrzaczek M.CRK2 enhances salt tolerance by regulating callose deposition in connection with PLDα1 Plant Physiol. 2019 Aug;180(4):2004-2021. doi: 10.1104/pp.19.00560

Sahgal P., Alanko J, Paatero I, Arjonen A, Pietilä M, Rokka A and Ivaska J GGA2 and RAB13 promote activity-dependent β1-integrin recycling. J Cell Sci. 2019 Jun 7;132(11). pii: jcs233387. doi: 10.1242/jcs.233387.

Previous publications are available here.

Selected Articles Citing the Turku Proteomics Facility

2020

Grebe S, Trotta A, Bajwa AA, Mancini I, Bag P, Jansson S, Tikkanen M, Aro EM. Specific thylakoid protein phosphorylations are prerequisites for overwintering of Norway spruce (Picea abies) photosynthesis. Proc Natl Acad Sci U S A. 2020 Jul 28;117(30):17499-17509. doi: 10.1073/pnas.2004165117.

Santio NM, Vainio V, Hoikkala T, Mung KL, Lång M, Vahakoski R, Zdrojewska J, Coffey ET, Kremneva E, Rainio EM, Koskinen PJ. PIM1 accelerates prostate cancer cell motility by phosphorylating actin capping proteins. Cell Commun Signal. 2020 Aug 8;18(1):121. doi: 10.1186/s12964-020-00618-6. PMID: 32771000

Angeleri, M., D. Muth-Pawlak, A. Wilde, E. M. Aro, and N. Battchikova. Global Proteome Response of Synechocystis 6803 to Extreme Copper Environments Applied to Control the Activity of the Inducible PetJ Promoter. Journal of Applied Microbiology 126(3):826–41.

2019

Eerola SK, Santio NM, Rinne S, Kouvonen P, Corthals GL, Scaravilli M, Scala G, Serra A, Greco D, Ruusuvuori P, Latonen L, Rainio EM, Visakorpi T, Koskinen PJ. Phosphorylation of NFATC1 at PIM1 target sites is essential for its ability to promote prostate cancer cell migration and invasion. Cell Commun Signal. 2019 Nov 15;17(1):148. doi: 10.1186/s12964-019-0463-y. PMID: 31730483

Gerotto C, Trotta A, Bajwa AA, Mancini I, Morosinotto T, Aro EM (2019) Thylakoid protein phosphorylation dynamics in a moss mutant lacking SERINE/THREONINE PROTEIN KINASE STN8. Plant physiology 180(3):1582-1597 doi: 10.1104/pp.19.00117.

Huokko, Tuomas, Dorota Muth-Pawlak, and Eva-Mari Aro. (2019) Thylakoid Localized Type 2 NAD(P)H Dehydrogenase NdbA Optimizes Light-Activated Heterotrophic Growth of Synechocystis Sp. PCC 6803. Plant and Cell Physiology 60(6):1386–99.

Lietzén N, Hirvonen K, Honkimaa A, Buchacher T, Laiho JE, Oikarinen S, Mazur MA, Flodström-Tullberg M, Dufour E, Sioofy-Khojine A-B, Hyöty H, Lahesmaa R (2019). Coxsackievirus B persistence modifies the proteome and the secretome of pancreatic ductal cells. iScience, 19:340-357.
Mohd Moin Khan, Tommi Välikangas, Meraj Hasan Khan, Robert Moulder, Ubaid Ullah, Santosh Dilip Bhosale, Elina Komsi, Umar Butt, Xi Qiao, Jukka Westermarck, Laura L Elo, Riitta Lahesmaa (2019) Protein Interactome of the Cancerous Inhibitor of Protein Phosphatase 2A (CIP2A) in Th17 Cells. bioRxiv 809459; doi: https://doi.org/10.1101/809459

Ruuskanen S, Espín S, Sánchez-Virosta P, Sarraude T, Hsu B-Y, Pajunen P, Costa RA, Eens M, Hargitai R, Török J, Eeva T. (2019) Transgenerational endocrine disruption: does elemental pollution affect egg or nestling thyroid hormone levels in a wild songbird? Environmental Pollution, 247.

Tadini L, Peracchio C, Trotta A, Colombo M, Mancini I, Jeran N, Costa A, Faoro F, Marsoni M, Vannini C, Aro EM, Pesaresi P. GUN1 influences the accumulation of NEP-dependent transcripts and chloroplast protein import in Arabidopsis cotyledons upon perturbation of chloroplast protein homeostasis. The plant journal. doi.org/10.1111/tpj.14585.

Tripathi SK, Välikangas T, Shetty A, Khan MM, Moulder R, Bhosale SD, Komsi E, Salo V, De Albuquerque RS, Rasool O, Galande S, Elo LL, Lahesmaa R. (2019) Quantitative Proteomics Reveals the Dynamic Protein Landscape during Initiation of Human Th17 Cell Polarization. iScience. 2019 Jan 25;11:334-355. doi:10.1016/j.isci.2018.12.020. Epub 2018 Dec 26. PubMed PMID: 30641411; PubMedCentral PMCID: PMC6330361.

Previous selected articles citing proteomics core are available here.