Mass Spectrometers

Orbitrap Astral

With the FAIMS Pro Duo interface for Enhanced LC/MS instrument selectivity and detection limits.

ZenoTOF 7600

With electron activated dissociation (EAD) fragmentation for top-down and post-translational modification proteomics. With ZenoTrap for improved MS/MS sensitivity.

Orbitrap Exploris 480

With the FAIMS Pro Duo interface for Enhanced LC/MS instrument selectivity and detection limits.

Orbitrap Fusion Lumos

With ETD and UVPD fragmentation techniques for top-down proteomics. With the FAIMS Pro interface for Enhanced LC/MS instrument

Q Exactive HF

ESI-hybrid quadrupole-orbitrap (Thermo Scientific)

Chromatography

EASY-nLC 1200/1000

A dedicated nano LC system for proteomic analyses.

Evosep One

UHPLC instrument for robust and high throughput proteomics.

Agilent 1260 Infinity

Liquid chromatography system for offline peptide separations.

Data Processing and Analysis

Available software

  • Proteome Discoverer 3.2
    • Chimerys Intelligent Search Algorithm
    • Mascot 3.0 Server
  • Spectronaut 19
  • Spectrodive 12
  • DIA-NN 2.1.0

Open access analysis computers

Turku Proteomics Facility has three open access computers

Available software:

  • Proteome Discoverer 3.1
    • Chimerys Intelligent Search Algorithm
    • Mascot 3.0 Server
    • Spectronaut 19
    • Spectrodive 12